HL_9XWO_077

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

9XWO|1|a|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XWO_077 not in the Motif Atlas

Geometric match to HL_8B0X_069

Geometric discrepancy: 0.1128

The information below is about HL_8B0X_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9XWO|1|a|A|1630
9XWO|1|a|G|1631
9XWO|1|a|A|1632
9XWO|1|a|G|1633
9XWO|1|a|A|1634
9XWO|1|a|A|1635
9XWO|1|a|U|1636

Current chains

Chain a

23S rRNA

Nearby chains