HL_9XWO_081
3D structure
- PDB id
- 9XWO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- UUUAUUAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 9XWO|1|a|A|1780, 9XWO|1|a|U|1781, 9XWO|1|a|U|1782, 9XWO|1|a|A|1786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9XWO_081 not in the Motif Atlas
- Geometric match to HL_8B0X_073
- Geometric discrepancy: 0.0751
- The information below is about HL_8B0X_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.3
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 10
Unit IDs
9XWO|1|a|U|1777
9XWO|1|a|U|1778
9XWO|1|a|U|1779
9XWO|1|a|A|1780
9XWO|1|a|U|1781
9XWO|1|a|U|1782
9XWO|1|a|A|1783
9XWO|1|a|A|1784
9XWO|1|a|A|1785
9XWO|1|a|A|1786
9XWO|1|a|A|1787
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain 6
- Secretion monitor
- Chain c
- Large ribosomal subunit protein uL2
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