HL_9XWO_082

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

9XWO|1|a|A|1808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XWO_082 not in the Motif Atlas

Homologous match to HL_7A0S_046

Geometric discrepancy: 0.5797

The information below is about HL_7A0S_046

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9XWO|1|a|C|1806
9XWO|1|a|G|1807
9XWO|1|a|A|1808
9XWO|1|a|A|1809
9XWO|1|a|A|1810
9XWO|1|a|G|1811

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2

Chain w

Large ribosomal subunit protein bL28