HL_9XWO_104

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

9XWO|1|a|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9XWO_104 not in the Motif Atlas

Homologous match to HL_7A0S_067

Geometric discrepancy: 0.1709

The information below is about HL_7A0S_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.3

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9XWO|1|a|G|2819
9XWO|1|a|A|2820
9XWO|1|a|A|2821
9XWO|1|a|G|2822
9XWO|1|a|A|2823
9XWO|1|a|C|2824
9XWO|1|a|G|2825
9XWO|1|a|A|2826
9XWO|1|a|C|2827

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain m

Large ribosomal subunit protein bL17