HL_9Y49_016

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y49_016 not in the Motif Atlas

Geometric match to HL_8B0X_006

Geometric discrepancy: 0.2534

The information below is about HL_8B0X_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9Y49|1|A5|G|1178
9Y49|1|A5|U|1179
9Y49|1|A5|C|1180
9Y49|1|A5|C|1181
9Y49|1|A5|C|1182
9Y49|1|A5|C|1183

Current chains

Chain A5

LSU-alpha rRNA (1722-MER)

Nearby chains

Chain CD

60S ribosomal protein L5