HL_9Y49_042

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y49_042 not in the Motif Atlas

Homologous match to HL_9PN5_037

Geometric discrepancy: 0.2141

The information below is about HL_9PN5_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97067.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9Y49|1|A6|G|2664
9Y49|1|A6|U|2665
9Y49|1|A6|U|2666
9Y49|1|A6|C|2667
9Y49|1|A6|G|2668
9Y49|1|A6|C|2669
9Y49|1|A6|C|2670

Current chains

Chain A6

LSU-beta rRNA (2069-MER)

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CR

Large ribosomal subunit protein eL19

Chain Cp

60S ribosomal protein L37a