HL_9Y49_044

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUUG

Length

5 nucleotides

Bulged bases

9Y49|1|A6|C|2739, 9Y49|1|A6|U|2740

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y49_044 not in the Motif Atlas

Homologous match to HL_9PN5_039

Geometric discrepancy: 0.2107

The information below is about HL_9PN5_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90436.5

Basepair signature

cWW-F

Number of instances in this motif group

42

Unit IDs

9Y49|1|A6|C|2738
9Y49|1|A6|C|2739
9Y49|1|A6|U|2740
9Y49|1|A6|U|2741
9Y49|1|A6|G|2742

Current chains

Chain A6

LSU-beta rRNA (2069-MER)

Nearby chains

Chain A5

Large subunit ribosomal RNA; LSU rRNA

Chain CA

60S ribosomal protein L8

Chain Cp

60S ribosomal protein L37a