HL_9Y49_064

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y49_064 not in the Motif Atlas

Homologous match to HL_8GLP_064

Geometric discrepancy: 0.3801

The information below is about HL_8GLP_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9Y49|1|A6|U|4321
9Y49|1|A6|G|4322
9Y49|1|A6|A|4323
9Y49|1|A6|A|4324
9Y49|1|A6|A|4325
9Y49|1|A6|G|4326

Current chains

Chain A6

LSU-beta rRNA (2069-MER)

Nearby chains

Chain CD

60S ribosomal protein L5

Chain CT

60S ribosomal protein L21

Chain Co

60S ribosomal protein L36a