HL_9Y49_067

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9Y49|1|A6|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y49_067 not in the Motif Atlas

Homologous match to HL_9H3G_063

Geometric discrepancy: 0.2704

The information below is about HL_9H3G_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9Y49|1|A6|A|4474
9Y49|1|A6|G|4475
9Y49|1|A6|C|4476
9Y49|1|A6|A|4477
9Y49|1|A6|G|4478
9Y49|1|A6|A|4479
9Y49|1|A6|A|4480
9Y49|1|A6|U|4481

Current chains

Chain A6

LSU-beta rRNA (2069-MER)

Nearby chains

Chain CH

60S ribosomal protein L9

Chain Cm

60S ribosomal protein L40

Chain Ct

Elongation factor 2