HL_9Y49_070

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y49_070 not in the Motif Atlas

Homologous match to HL_8GLP_070

Geometric discrepancy: 0.1324

The information below is about HL_8GLP_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9Y49|1|A6|C|4603
9Y49|1|A6|G|4604
9Y49|1|A6|A|4605
9Y49|1|A6|G|4606
9Y49|1|A6|A|4607
9Y49|1|A6|G|4608

Current chains

Chain A6

LSU-beta rRNA (2069-MER)

Nearby chains

Chain CH

60S ribosomal protein L9

Chain Ct

Elongation factor 2