HL_9Y49_073

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCCUGUCCCCGCCGGCGGCCCCGCCGCGCGCCGGGACC

Length

38 nucleotides

Bulged bases

9Y49|1|A6|C|4777, 9Y49|1|A6|C|4778, 9Y49|1|A6|U|4779, 9Y49|1|A6|G|4780, 9Y49|1|A6|U|4781, 9Y49|1|A6|C|4782, 9Y49|1|A6|C|4783, 9Y49|1|A6|C|4784, 9Y49|1|A6|C|4785, 9Y49|1|A6|G|4786, 9Y49|1|A6|C|4787, 9Y49|1|A6|C|4788, 9Y49|1|A6|G|4789, 9Y49|1|A6|G|4790, 9Y49|1|A6|C|4791, 9Y49|1|A6|G|4792, 9Y49|1|A6|G|4793, 9Y49|1|A6|C|4840, 9Y49|1|A6|C|4841, 9Y49|1|A6|C|4842, 9Y49|1|A6|C|4843, 9Y49|1|A6|G|4844, 9Y49|1|A6|C|4845, 9Y49|1|A6|C|4846, 9Y49|1|A6|G|4847, 9Y49|1|A6|C|4848, 9Y49|1|A6|G|4849, 9Y49|1|A6|C|4850, 9Y49|1|A6|G|4851, 9Y49|1|A6|C|4852, 9Y49|1|A6|C|4853, 9Y49|1|A6|G|4854, 9Y49|1|A6|G|4855, 9Y49|1|A6|G|4856, 9Y49|1|A6|A|4857, 9Y49|1|A6|C|4858

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y49|1|A6|G|4776
9Y49|1|A6|C|4777
9Y49|1|A6|C|4778
9Y49|1|A6|U|4779
9Y49|1|A6|G|4780
9Y49|1|A6|U|4781
9Y49|1|A6|C|4782
9Y49|1|A6|C|4783
9Y49|1|A6|C|4784
9Y49|1|A6|C|4785
9Y49|1|A6|G|4786
9Y49|1|A6|C|4787
9Y49|1|A6|C|4788
9Y49|1|A6|G|4789
9Y49|1|A6|G|4790
9Y49|1|A6|C|4791
9Y49|1|A6|G|4792
9Y49|1|A6|G|4793
9Y49|1|A6|C|4840
9Y49|1|A6|C|4841
9Y49|1|A6|C|4842
9Y49|1|A6|C|4843
9Y49|1|A6|G|4844
9Y49|1|A6|C|4845
9Y49|1|A6|C|4846
9Y49|1|A6|G|4847
9Y49|1|A6|C|4848
9Y49|1|A6|G|4849
9Y49|1|A6|C|4850
9Y49|1|A6|G|4851
9Y49|1|A6|C|4852
9Y49|1|A6|C|4853
9Y49|1|A6|G|4854
9Y49|1|A6|G|4855
9Y49|1|A6|G|4856
9Y49|1|A6|A|4857
9Y49|1|A6|C|4858
9Y49|1|A6|C|4859

Current chains

Chain A6

LSU-beta rRNA (2069-MER)

Nearby chains

Chain CM

60S ribosomal protein L14

Chain CO

60S ribosomal protein L13a