HL_9Y49_091

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

9Y49|1|B2|C|417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y49_091 not in the Motif Atlas

Homologous match to HL_9PN5_085

Geometric discrepancy: 0.4511

The information below is about HL_9PN5_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9Y49|1|B2|U|416
9Y49|1|B2|C|417
9Y49|1|B2|A|418
9Y49|1|B2|G|419
9Y49|1|B2|G|420
9Y49|1|B2|G|421

Current chains

Chain B2

18S rRNA (1786-MER)

Nearby chains

Chain AC

40S ribosomal protein S2

Chain AJ

40S ribosomal protein S9

Chain AL

40S ribosomal protein S11

Chain AW

40S ribosomal protein S15a