HL_9Y49_115

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y49_115 not in the Motif Atlas

Homologous match to HL_9PN5_107

Geometric discrepancy: 0.1189

The information below is about HL_9PN5_107

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9Y49|1|B2|C|1565
9Y49|1|B2|G|1566
9Y49|1|B2|G|1567
9Y49|1|B2|C|1568
9Y49|1|B2|A|1569
9Y49|1|B2|G|1570

Current chains

Chain B2

18S rRNA (1786-MER)

Nearby chains

Chain AP

40S ribosomal protein S15

Chain AS

40S ribosomal protein S18

Chain AT

40S ribosomal protein S19