HL_9Y49_121

3D structure

PDB id

9Y49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GCUCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9Y49_121 not in the Motif Atlas

Homologous match to HL_7VNV_002

Geometric discrepancy: 0.3272

The information below is about HL_7VNV_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

9Y49|1|tR|G|32
9Y49|1|tR|C|33
9Y49|1|tR|U|34
9Y49|1|tR|C|35
9Y49|1|tR|A|36
9Y49|1|tR|U|37
9Y49|1|tR|A|38
9Y49|1|tR|A|39
9Y49|1|tR|C|40

Current chains

Chain tR

tRNA (77-MER)

Nearby chains

Chain AQ

40S ribosomal protein S16

Chain B2

Small subunit ribosomal RNA; SSU rRNA