HL_9Y49_122
3D structure
- PDB id
- 9Y49 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome with P/E tRNA and eEF2 (rotated)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9Y49_122 not in the Motif Atlas
- Homologous match to HL_4MGN_004
- Geometric discrepancy: 0.2114
- The information below is about HL_4MGN_004
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9Y49|1|tR|G|54
9Y49|1|tR|U|55
9Y49|1|tR|U|56
9Y49|1|tR|C|57
9Y49|1|tR|A|58
9Y49|1|tR|A|59
9Y49|1|tR|A|60
9Y49|1|tR|U|61
9Y49|1|tR|C|62
Current chains
- Chain tR
- tRNA (77-MER)
Nearby chains
- Chain A6
- Large subunit ribosomal RNA; LSU rRNA
- Chain Cz
- 60S ribosomal protein L10a
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