HL_9YDC_008
3D structure
- PDB id
- 9YDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- UUUGGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 9YDC|1|A|G|283, 9YDC|1|A|A|284, 9YDC|1|A|A|285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDC_008 not in the Motif Atlas
- Homologous match to HL_9PN5_008
- Geometric discrepancy: 0.082
- The information below is about HL_9PN5_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_63894.5
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 25
Unit IDs
9YDC|1|A|U|278
9YDC|1|A|U|279
9YDC|1|A|U|280
9YDC|1|A|G|281
9YDC|1|A|G|282
9YDC|1|A|G|283
9YDC|1|A|A|284
9YDC|1|A|A|285
9YDC|1|A|U|286
9YDC|1|A|G|287
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LN
- 60S ribosomal protein L13-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain Lc
- 60S ribosomal protein L28
- Chain Lq
- 60S ribosomal protein L42-A
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