HL_9YDC_022

3D structure

PDB id

9YDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

9YDC|1|A|C|959, 9YDC|1|A|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDC_022 not in the Motif Atlas

Homologous match to HL_9SUM_023

Geometric discrepancy: 0.169

The information below is about HL_9SUM_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.4

Basepair signature

cWW-F-F

Number of instances in this motif group

12

Unit IDs

9YDC|1|A|C|958
9YDC|1|A|C|959
9YDC|1|A|U|960
9YDC|1|A|C|961
9YDC|1|A|A|962
9YDC|1|A|G|963

Current chains

Chain A

25S RNA

Nearby chains

Chain Lc

60S ribosomal protein L28

Chain Ld

60S ribosomal protein L29

Chain Lq

60S ribosomal protein L42-A