HL_9YDC_028

3D structure

PDB id

9YDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

AUGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDC_028 not in the Motif Atlas

Homologous match to HL_9PN5_030

Geometric discrepancy: 0.0663

The information below is about HL_9PN5_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33597.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

142

Unit IDs

9YDC|1|A|A|1462
9YDC|1|A|U|1463
9YDC|1|A|G|1464
9YDC|1|A|A|1465
9YDC|1|A|G|1466
9YDC|1|A|A|1467
9YDC|1|A|A|1468
9YDC|1|A|C|1469
9YDC|1|A|U|1470

Current chains

Chain A

25S RNA

Nearby chains

Chain LR

60S ribosomal protein L17-A

Chain LT

60S ribosomal protein L19-A

Chain Lf

60S ribosomal protein L31-A