HL_9YDC_038

3D structure

PDB id

9YDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9YDC|1|A|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDC_038 not in the Motif Atlas

Homologous match to HL_8GLP_047

Geometric discrepancy: 0.0835

The information below is about HL_8GLP_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.7

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9YDC|1|A|C|1923
9YDC|1|A|U|1924
9YDC|1|A|U|1925
9YDC|1|A|C|1926
9YDC|1|A|G|1927
9YDC|1|A|G|1928

Current chains

Chain A

25S RNA

Nearby chains

Chain E

Small subunit ribosomal RNA; SSU rRNA

Chain Lp

60S ribosomal protein L41-A

Chain Lr

60S ribosomal protein L43-A