HL_9YDC_047

3D structure

PDB id

9YDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9YDC|1|A|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDC|1|A|C|2616
9YDC|1|A|U|2617
9YDC|1|A|G|2618
9YDC|1|A|G|2619
9YDC|1|A|G|2620
9YDC|1|A|G|2621
9YDC|1|A|C|2622
9YDC|1|A|G|2623
9YDC|1|A|G|2624

Current chains

Chain A

25S RNA

Nearby chains

Chain LL

Large ribosomal subunit protein uL16

Chain Ld

60S ribosomal protein L29

Chain m

Transfer RNA; tRNA