HL_9YDC_064

3D structure

PDB id

9YDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

CCUUGUUG

Length

8 nucleotides

Bulged bases

9YDC|1|A|U|3351, 9YDC|1|A|U|3354, 9YDC|1|A|U|3355

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDC_064 not in the Motif Atlas

Homologous match to HL_9AXU_067

Geometric discrepancy: 0.4464

The information below is about HL_9AXU_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YDC|1|A|C|3349
9YDC|1|A|C|3350
9YDC|1|A|U|3351
9YDC|1|A|U|3352
9YDC|1|A|G|3353
9YDC|1|A|U|3354
9YDC|1|A|U|3355
9YDC|1|A|G|3356

Current chains

Chain A

25S RNA

Nearby chains

Chain SV

40S ribosomal protein S8-A