HL_9YDC_091

3D structure

PDB id

9YDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

9YDC|1|E|G|1243, 9YDC|1|E|G|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDC_091 not in the Motif Atlas

Homologous match to HL_9H3G_100

Geometric discrepancy: 0.1774

The information below is about HL_9H3G_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98423.6

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9YDC|1|E|A|1238
9YDC|1|E|U|1239
9YDC|1|E|U|1240
9YDC|1|E|G|1241
9YDC|1|E|A|1242
9YDC|1|E|G|1243
9YDC|1|E|A|1244
9YDC|1|E|G|1245
9YDC|1|E|C|1246
9YDC|1|E|U|1247

Current chains

Chain E

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S15

Chain SM

40S ribosomal protein S29-A

Chain SN

Ubiquitin-40S ribosomal protein S31