HL_9YDC_095

3D structure

PDB id

9YDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

3.02 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

9YDC|1|E|U|1398, 9YDC|1|E|C|1399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDC_095 not in the Motif Atlas

Geometric match to HL_8G9Z_003

Geometric discrepancy: 0.2782

The information below is about HL_8G9Z_003

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

9YDC|1|E|U|1396
9YDC|1|E|U|1397
9YDC|1|E|U|1398
9YDC|1|E|C|1399
9YDC|1|E|A|1400
9YDC|1|E|A|1401
9YDC|1|E|G|1402

Current chains

Chain E

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S17-B