HL_9YDC_101
3D structure
- PDB id
- 9YDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- ACUUUUAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDC_101 not in the Motif Atlas
- Homologous match to HL_6GSK_203
- Geometric discrepancy: 0.2092
- The information below is about HL_6GSK_203
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.5
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 45
Unit IDs
9YDC|1|m|A|31
9YDC|1|m|C|32
9YDC|1|m|U|33
9YDC|1|m|U|34
9YDC|1|m|U|35
9YDC|1|m|U|36
9YDC|1|m|A|37
9YDC|1|m|A|38
9YDC|1|m|U|39
Current chains
- Chain m
- A site tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- messenger RNA
- Chain E
- Small subunit ribosomal RNA; SSU rRNA
- Chain Sc
- 40S ribosomal protein S23-A
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