HL_9YDC_102
3D structure
- PDB id
- 9YDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/P, P/E tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- GUUCGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDC_102 not in the Motif Atlas
- Homologous match to HL_9H3G_078
- Geometric discrepancy: 0.1053
- The information below is about HL_9H3G_078
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDC|1|m|G|53
9YDC|1|m|U|54
9YDC|1|m|U|55
9YDC|1|m|C|56
9YDC|1|m|G|57
9YDC|1|m|A|58
9YDC|1|m|A|59
9YDC|1|m|U|60
9YDC|1|m|C|61
Current chains
- Chain m
- A site tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain LL
- Large ribosomal subunit protein uL16
- Chain LM
- Large ribosomal subunit protein uL5B
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