HL_9YDD_006

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

9YDD|1|A|U|210, 9YDD|1|A|A|211

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDD_006 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.0527

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.11

Basepair signature

cWW-F

Number of instances in this motif group

25

Unit IDs

9YDD|1|A|C|208
9YDD|1|A|A|209
9YDD|1|A|U|210
9YDD|1|A|A|211
9YDD|1|A|G|212

Current chains

Chain A

25S RNA

Nearby chains

Chain LF

60S ribosomal protein L4-A

Chain La

60S ribosomal protein L26-A