HL_9YDD_009
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GGUAAAUUCC
- Length
- 10 nucleotides
- Bulged bases
- 9YDD|1|A|G|304, 9YDD|1|A|U|305
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDD_009 not in the Motif Atlas
- Homologous match to HL_9SUM_010
- Geometric discrepancy: 0.0633
- The information below is about HL_9SUM_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_00911.5
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
9YDD|1|A|G|303
9YDD|1|A|G|304
9YDD|1|A|U|305
9YDD|1|A|A|306
9YDD|1|A|A|307
9YDD|1|A|A|308
9YDD|1|A|U|309
9YDD|1|A|U|310
9YDD|1|A|C|311
9YDD|1|A|C|312
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LN
- 60S ribosomal protein L13-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain Lc
- 60S ribosomal protein L28
- Chain Lk
- 60S ribosomal protein L36-A
- Chain Lq
- 60S ribosomal protein L42-A
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