HL_9YDD_024

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

9YDD|1|A|G|1131

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDD_024 not in the Motif Atlas

Homologous match to HL_9SUM_025

Geometric discrepancy: 0.0514

The information below is about HL_9SUM_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9YDD|1|A|G|1126
9YDD|1|A|G|1127
9YDD|1|A|U|1128
9YDD|1|A|A|1129
9YDD|1|A|A|1130
9YDD|1|A|G|1131
9YDD|1|A|C|1132

Current chains

Chain A

25S RNA

Nearby chains

Chain LL

Large ribosomal subunit protein uL16