HL_9YDD_025
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GGAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDD_025 not in the Motif Atlas
- Homologous match to HL_9PN5_025
- Geometric discrepancy: 0.068
- The information below is about HL_9PN5_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47171.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
9YDD|1|A|G|1148
9YDD|1|A|G|1149
9YDD|1|A|A|1150
9YDD|1|A|U|1151
9YDD|1|A|G|1152
9YDD|1|A|A|1153
9YDD|1|A|A|1154
9YDD|1|A|C|1155
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain LI
- 60S ribosomal protein L7-A
- Chain Lg
- 60S ribosomal protein L32
- Chain Lh
- 60S ribosomal protein L33-A
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