HL_9YDD_026
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 9YDD|1|A|A|1352, 9YDD|1|A|U|1353, 9YDD|1|A|G|1354, 9YDD|1|A|U|1356
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDD|1|A|U|1347
9YDD|1|A|U|1348
9YDD|1|A|G|1349
9YDD|1|A|A|1350
9YDD|1|A|U|1351
9YDD|1|A|A|1352
9YDD|1|A|U|1353
9YDD|1|A|G|1354
9YDD|1|A|A|1355
9YDD|1|A|U|1356
9YDD|1|A|G|1357
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain LH
- Large ribosomal subunit protein eL6B
- Chain LS
- 60S ribosomal protein L18-A
- Chain Lg
- 60S ribosomal protein L32
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