HL_9YDD_029
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AGCAGUU
- Length
- 7 nucleotides
- Bulged bases
- 9YDD|1|A|G|1507, 9YDD|1|A|U|1511
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDD_029 not in the Motif Atlas
- Homologous match to HL_9AXU_029
- Geometric discrepancy: 0.1564
- The information below is about HL_9AXU_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_49081.3
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 18
Unit IDs
9YDD|1|A|A|1506
9YDD|1|A|G|1507
9YDD|1|A|C|1508
9YDD|1|A|A|1509
9YDD|1|A|G|1510
9YDD|1|A|U|1511
9YDD|1|A|U|1512
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LR
- 60S ribosomal protein L17-A
- Chain LT
- 60S ribosomal protein L19-A
- Chain Ln
- 60S ribosomal protein L39
Coloring options: