HL_9YDD_033
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GUUAUCUUU
- Length
- 9 nucleotides
- Bulged bases
- 9YDD|1|A|U|1687
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDD_033 not in the Motif Atlas
- Homologous match to HL_9PN5_036
- Geometric discrepancy: 0.1018
- The information below is about HL_9PN5_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_22758.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9YDD|1|A|G|1680
9YDD|1|A|U|1681
9YDD|1|A|U|1682
9YDD|1|A|A|1683
9YDD|1|A|U|1684
9YDD|1|A|C|1685
9YDD|1|A|U|1686
9YDD|1|A|U|1687
9YDD|1|A|U|1688
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LT
- 60S ribosomal protein L19-A
- Chain LW
- 60S ribosomal protein L22-A
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