HL_9YDD_035

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CCGUG

Length

5 nucleotides

Bulged bases

9YDD|1|A|C|1793, 9YDD|1|A|G|1794

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDD_035 not in the Motif Atlas

Homologous match to HL_9AXU_037

Geometric discrepancy: 0.0779

The information below is about HL_9AXU_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90436.7

Basepair signature

cWW-F

Number of instances in this motif group

43

Unit IDs

9YDD|1|A|C|1792
9YDD|1|A|C|1793
9YDD|1|A|G|1794
9YDD|1|A|U|1795
9YDD|1|A|G|1796

Current chains

Chain A

25S RNA

Nearby chains

Chain LD

60S ribosomal protein L2-A

Chain Lr

60S ribosomal protein L43-A