HL_9YDD_054
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CGUUCAUAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDD_054 not in the Motif Atlas
- Homologous match to HL_9H3G_062
- Geometric discrepancy: 0.168
- The information below is about HL_9H3G_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_52011.4
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9YDD|1|A|C|2840
9YDD|1|A|G|2841
9YDD|1|A|U|2842
9YDD|1|A|U|2843
9YDD|1|A|C|2844
9YDD|1|A|A|2845
9YDD|1|A|U|2846
9YDD|1|A|A|2847
9YDD|1|A|G|2848
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LL
- Large ribosomal subunit protein uL16
- Chain Lo
- Ubiquitin-60S ribosomal protein L40
- Chain m
- Transfer RNA; tRNA
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