HL_9YDD_073

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

9YDD|1|E|U|159

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDD_073 not in the Motif Atlas

Homologous match to HL_9SUM_074

Geometric discrepancy: 0.1223

The information below is about HL_9SUM_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9YDD|1|E|G|154
9YDD|1|E|U|155
9YDD|1|E|A|156
9YDD|1|E|A|157
9YDD|1|E|U|158
9YDD|1|E|U|159
9YDD|1|E|C|160

Current chains

Chain E

18S rRNA

Nearby chains

Chain ST

40S ribosomal protein S6-A

Chain Sd

40S ribosomal protein S24-A