HL_9YDD_079

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

9YDD|1|E|A|416

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDD_079 not in the Motif Atlas

Homologous match to HL_9H3G_087

Geometric discrepancy: 0.1739

The information below is about HL_9H3G_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.7

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9YDD|1|E|C|414
9YDD|1|E|C|415
9YDD|1|E|A|416
9YDD|1|E|A|417
9YDD|1|E|G|418
9YDD|1|E|G|419

Current chains

Chain E

18S rRNA

Nearby chains

Chain LX

60S ribosomal protein L23-A

Chain ST

40S ribosomal protein S6-A