HL_9YDD_084

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

9YDD|1|E|U|779, 9YDD|1|E|U|781, 9YDD|1|E|U|782

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDD_084 not in the Motif Atlas

Geometric match to HL_8CRE_202

Geometric discrepancy: 0.3998

The information below is about HL_8CRE_202

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.5

Basepair signature

cWW-F-F

Number of instances in this motif group

21

Unit IDs

9YDD|1|E|C|777
9YDD|1|E|G|778
9YDD|1|E|U|779
9YDD|1|E|A|780
9YDD|1|E|U|781
9YDD|1|E|U|782
9YDD|1|E|G|783

Current chains

Chain E

18S rRNA

Nearby chains

Chain Sd

40S ribosomal protein S24-A