HL_9YDD_091
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AUUGAGAGCU
- Length
- 10 nucleotides
- Bulged bases
- 9YDD|1|E|G|1243, 9YDD|1|E|G|1245
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDD_091 not in the Motif Atlas
- Homologous match to HL_9PN5_102
- Geometric discrepancy: 0.1989
- The information below is about HL_9PN5_102
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_98423.6
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
9YDD|1|E|A|1238
9YDD|1|E|U|1239
9YDD|1|E|U|1240
9YDD|1|E|G|1241
9YDD|1|E|A|1242
9YDD|1|E|G|1243
9YDD|1|E|A|1244
9YDD|1|E|G|1245
9YDD|1|E|C|1246
9YDD|1|E|U|1247
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S15
- Chain SM
- 40S ribosomal protein S29-A
- Chain SN
- Ubiquitin-40S ribosomal protein S31
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