HL_9YDD_092

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDD_092 not in the Motif Atlas

Homologous match to HL_9H3G_101

Geometric discrepancy: 0.0808

The information below is about HL_9H3G_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9YDD|1|E|A|1296
9YDD|1|E|G|1297
9YDD|1|E|U|1298
9YDD|1|E|G|1299
9YDD|1|E|A|1300
9YDD|1|E|U|1301

Current chains

Chain E

18S rRNA

Nearby chains

Chain SP

40S ribosomal protein S0-A

Chain SR

40S ribosomal protein S2