HL_9YDD_093

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

9YDD|1|E|U|1314

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDD_093 not in the Motif Atlas

Homologous match to HL_9SUM_095

Geometric discrepancy: 0.0899

The information below is about HL_9SUM_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.5

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

25

Unit IDs

9YDD|1|E|C|1309
9YDD|1|E|U|1310
9YDD|1|E|U|1311
9YDD|1|E|A|1312
9YDD|1|E|A|1313
9YDD|1|E|U|1314
9YDD|1|E|U|1315
9YDD|1|E|G|1316

Current chains

Chain E

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S17-B