HL_9YDD_095

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

9YDD|1|E|U|1398, 9YDD|1|E|C|1399

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDD_095 not in the Motif Atlas

Geometric match to HL_9AXU_017

Geometric discrepancy: 0.2696

The information below is about HL_9AXU_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

9YDD|1|E|U|1396
9YDD|1|E|U|1397
9YDD|1|E|U|1398
9YDD|1|E|C|1399
9YDD|1|E|A|1400
9YDD|1|E|A|1401
9YDD|1|E|G|1402

Current chains

Chain E

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S17-B