HL_9YDD_096

3D structure

PDB id

9YDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDD_096 not in the Motif Atlas

Homologous match to HL_9PN5_107

Geometric discrepancy: 0.1111

The information below is about HL_9PN5_107

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9YDD|1|E|C|1501
9YDD|1|E|G|1502
9YDD|1|E|A|1503
9YDD|1|E|G|1504
9YDD|1|E|A|1505
9YDD|1|E|G|1506

Current chains

Chain E

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S15

Chain SH

40S ribosomal protein S18-A

Chain SI

40S ribosomal protein S19-A