HL_9YDD_100
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CAGUUGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 9YDD|1|m|U|16, 9YDD|1|m|U|17, 9YDD|1|m|G|18, 9YDD|1|m|G|19, 9YDD|1|m|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDD_100 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.1248
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
9YDD|1|m|C|13
9YDD|1|m|A|14
9YDD|1|m|G|15
9YDD|1|m|U|16
9YDD|1|m|U|17
9YDD|1|m|G|18
9YDD|1|m|G|19
9YDD|1|m|U|20
9YDD|1|m|A|21
9YDD|1|m|G|22
Current chains
- Chain m
- A site tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain LL
- Large ribosomal subunit protein uL16
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