HL_9YDD_101
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- ACUUUUAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDD_101 not in the Motif Atlas
- Homologous match to HL_7U2J_104
- Geometric discrepancy: 0.1193
- The information below is about HL_7U2J_104
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81376.5
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 45
Unit IDs
9YDD|1|m|A|31
9YDD|1|m|C|32
9YDD|1|m|U|33
9YDD|1|m|U|34
9YDD|1|m|U|35
9YDD|1|m|U|36
9YDD|1|m|A|37
9YDD|1|m|A|38
9YDD|1|m|U|39
Current chains
- Chain m
- A site tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- messenger RNA
- Chain E
- Small subunit ribosomal RNA; SSU rRNA
- Chain SK
- 40S ribosomal protein S25-A
- Chain Sc
- 40S ribosomal protein S23-A
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