HL_9YDE_001
3D structure
- PDB id
- 9YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 9YDE|1|A|A|40, 9YDE|1|A|A|43
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDE_001 not in the Motif Atlas
- Homologous match to HL_8GLP_001
- Geometric discrepancy: 0.0537
- The information below is about HL_8GLP_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02262.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 38
Unit IDs
9YDE|1|A|U|38
9YDE|1|A|A|39
9YDE|1|A|A|40
9YDE|1|A|G|41
9YDE|1|A|C|42
9YDE|1|A|A|43
9YDE|1|A|U|44
9YDE|1|A|A|45
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LN
- 60S ribosomal protein L13-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain Lc
- 60S ribosomal protein L28
- Chain Lq
- 60S ribosomal protein L42-A
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