HL_9YDE_003
3D structure
- PDB id
- 9YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CGGCGAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9YDE_003 not in the Motif Atlas
- Homologous match to HL_9SUM_004
- Geometric discrepancy: 0.0827
- The information below is about HL_9SUM_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_76371.5
- Basepair signature
- cWW-tSH-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
9YDE|1|A|C|90
9YDE|1|A|G|91
9YDE|1|A|G|92
9YDE|1|A|C|93
9YDE|1|A|G|94
9YDE|1|A|A|95
9YDE|1|A|G|96
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LN
- 60S ribosomal protein L13-A
- Chain LS
- 60S ribosomal protein L18-A
- Chain Lc
- 60S ribosomal protein L28
- Chain Lq
- 60S ribosomal protein L42-A
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