HL_9YDE_023

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

9YDE|1|A|U|1081

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDE_023 not in the Motif Atlas

Homologous match to HL_9AXU_022

Geometric discrepancy: 0.1539

The information below is about HL_9AXU_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.5

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

25

Unit IDs

9YDE|1|A|C|1076
9YDE|1|A|U|1077
9YDE|1|A|U|1078
9YDE|1|A|A|1079
9YDE|1|A|A|1080
9YDE|1|A|U|1081
9YDE|1|A|U|1082
9YDE|1|A|G|1083

Current chains

Chain A

25S RNA

Nearby chains

Chain LG

60S ribosomal protein L5

Chain LV

60S ribosomal protein L21-A

Chain Ld

60S ribosomal protein L29