HL_9YDE_029

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

9YDE|1|A|G|1507, 9YDE|1|A|U|1511

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDE_029 not in the Motif Atlas

Homologous match to HL_9AXU_029

Geometric discrepancy: 0.1527

The information below is about HL_9AXU_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49081.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

9YDE|1|A|A|1506
9YDE|1|A|G|1507
9YDE|1|A|C|1508
9YDE|1|A|A|1509
9YDE|1|A|G|1510
9YDE|1|A|U|1511
9YDE|1|A|U|1512

Current chains

Chain A

25S RNA

Nearby chains

Chain LR

60S ribosomal protein L17-A

Chain LT

60S ribosomal protein L19-A

Chain Ln

60S ribosomal protein L39