HL_9YDE_030

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GAAGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDE_030 not in the Motif Atlas

Homologous match to HL_9PN5_032

Geometric discrepancy: 0.0718

The information below is about HL_9PN5_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9YDE|1|A|G|1544
9YDE|1|A|A|1545
9YDE|1|A|A|1546
9YDE|1|A|G|1547
9YDE|1|A|C|1548
9YDE|1|A|U|1549

Current chains

Chain A

25S RNA

Nearby chains

Chain LP

60S ribosomal protein L15-A

Chain Ll

60S ribosomal protein L37-A