HL_9YDE_034

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUUUAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9YDE_034 not in the Motif Atlas

Homologous match to HL_9PN5_037

Geometric discrepancy: 0.0891

The information below is about HL_9PN5_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97067.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

9YDE|1|A|G|1719
9YDE|1|A|U|1720
9YDE|1|A|U|1721
9YDE|1|A|U|1722
9YDE|1|A|A|1723
9YDE|1|A|U|1724
9YDE|1|A|C|1725

Current chains

Chain A

25S RNA

Nearby chains

Chain LT

60S ribosomal protein L19-A

Chain Lr

60S ribosomal protein L43-A